miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25519059|gb|BU257824.1|BU257824 AAGATGCTTTACTACTTGTGGATGCTGCATTCAGTTACTCTGCTCCTAAACCTGCTCGCTTGCTTGGCGTGGTTCATGGT
TCACGCAGAAAAAGGAGTAGACTTCGGTCTCTCAATCCTGTGGTTTGTTTTATTCACTCCTTGTGCCTTTCTCTGCTGGT
ACCGACCGATCTACAAGGCTTTCAGGTCTGACAGCTCCTTCAGCTTCTTCGTCTTCTTTTTCGTCTTCTTCTGCCAAATA
GCAATCTACATCATCCAGGCTGTCGGCATCCCTGGCTGGGGAGACAGCGGCTGGATTGCGGCGCTGTCGGAGCTGCATAG
GAACACGGCCGTGGCCATCATCATGATGGTGGTGGCAGGGTTCTTCACGCTCTGTGCAGTCCTCTCGCTCTTCCTCCTCA
AGCAGGTGCATTCCCTGTACCGGCGCACGGGAGCCAGCTTCCAAAGGGCTCAGGAGGAGTTTTCCCAAGGCATCCTCACC
AACAGGAGCTTCCAGAACGCGGCTGCCGGGGCGGCTCCTCAGCTGCAACGCAGTGCTTTCCGGGGCAATTAGCCCTCCCC
GAGGGCCACCTCTGCCTCTCTCCCCCTTCGGTTGTCAGCCAACCTTCATTTTCTAACGATGCACTTTTCGTGGGTACCGC
CTTAAGCTCTGTGGTGCCGACCCAATGAGAAGAGATCTGCATTTAGGCTTCAGTTGGCCTCCGGTTGTGACAGTTAAGTT
CCCTGCTTCGCTCCGGGACGTGGGAGAGGGGGAAGATGTTCTCTGAAGCAATCTCTTATCTCTGTCCCGAGCCGGCAGAG
CTTTCGTTATCCTCCTCCTCTCCCCCCGTCAGACAGCCCGGAAGTAAAAAGAAGGTTTGGATTTTACTTCCCCTTTTATC
AGCCCGGCTTAGAACAACTTGATTCCGGAAAA




Most similar to sp|O15127|SCAM2_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O15127|SCAM2_HUMAN Secretory carrier-associated membrane protein
           2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2
          Length = 329

 Score =  244 bits (624), Expect = 5e-64
 Identities = 123/184 (66%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
 Frame = +1

Query: 1   KMLYYLWMLHSVTXXXXXXXXXXWFMVHAEKGVDFGLSILWFVLFTPCAFLCWYRPIYKA 180
           KMLYYLWMLHSVT          WF  ++ KGVDFGLSILWF++FTPCAFLCWYRPIYKA
Sbjct: 150 KMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKA 209

Query: 181 FRSDXXXXXXXXXXXXXCQIAIYIIQAVGIPGWGDSGWIAALSEL-HRNTAVAIIMMVVA 357
           FRSD             CQI IYIIQ VGIPG GDSGWIAALS L + + A+++IMMVVA
Sbjct: 210 FRSDNSFSFFVFFFVFFCQIGIYIIQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVA 269

Query: 358 GFFTLCAVLSLFLLKQVHSLYRRTGASFQRAQEEFSQGILTNRSFQNAAAGAAPQLQRSA 537
           GFFTLCAVLS+FLL++VHSLYRRTGASFQ+AQEEFSQGI ++R+F  AA+ AA    + A
Sbjct: 270 GFFTLCAVLSVFLLQRVHSLYRRTGASFQQAQEEFSQGIFSSRTFHRAASSAA----QGA 325

Query: 538 FRGN 549
           F+GN
Sbjct: 326 FQGN 329